Challenges and importance of mid-sized deletion identification for genomic medicine - SeqOne Genomics
Manipulating NGS data with Galaxy - Galaxy Community Hub
Sequencing artifacts derived from a library preparation method using enzymatic fragmentation | PLOS ONE
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
Reads filtering · Issue #879 · igvteam/igv.js · GitHub
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
Challenges and importance of mid-sized deletion identification for genomic medicine - SeqOne Genomics
VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research. - Abstract - Europe PMC
Split Reads
Accurate Detection and Quantification of FLT3 Internal Tandem Duplications in Clinical Hybrid Capture Next-Generation Sequencing Data - ScienceDirect
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
SoftSearch: Integration of Multiple Sequence Features to Identify Breakpoints of Structural Variations | PLOS ONE
eKLIPse: a sensitive tool for the detection and quantification of mitochondrial DNA deletions from next-generation sequencing data - ScienceDirect
Hepatitis Delta Virus Genome RNA Synthesis Initiates at Position 1646 with a Nontemplated Guanosine | Journal of Virology
Alignment with STAR | Introduction to RNA-Seq using high-performance computing - ARCHIVED
A customized scaffolds approach for the detection and phasing of complex variants by next-generation sequencing | Scientific Reports
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
sequence alignment - What is local realignment and what is the problem it solves? - Bioinformatics Stack Exchange
Soft-clipped reads vs. improperly aligned reads at a structural variant... | Download Scientific Diagram
Split Reads
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis | Scientific Reports
Frontiers | MATCHCLIP: locate precise breakpoints for copy number variation using CIGAR string by matching soft clipped reads
BAMClipper: removing primers from alignments to minimize false-negative mutations in amplicon next-generation sequencing | Scientific Reports
ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly | Genome Medicine | Full Text
Common sources of 5′end soft clipping and mismatches in 3′ end seq. (a)... | Download Scientific Diagram
![PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar](https://d3i71xaburhd42.cloudfront.net/16b34a01c549bc1b12b6c5a17e85e1db117f26e3/2-Figure1-1.png "PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar")
PDF] Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads | Semantic Scholar
ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information | BMC Bioinformatics | Full Text
Confluence Mobile - Integrated Genome Browser Help Pages
The formation of soft-clipped reads. Soft-clipped reads span the... | Download Scientific Diagram
QC Fail Sequencing » Soft-clipping of reads may add potentially unwanted alignments to repetitive regions
